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Diff Rev Chgset Date Author Log Message
(edit) @1053 [1053] 4 days pierre Patch to allow the user to use the accumulator mode of the new NEST …
(edit) @1052 [1052] 11 days apdavison A couple of small fixes
(edit) @1051 [1051] 12 days apdavison Previous commit was in wrong directory. Here are the rest of the changes.
(edit) @1050 [1050] 12 days apdavison In neo_output branch, added clear keyword to Population.get_data()
(edit) @1049 [1049] 3 weeks pierre Fix a bug in the FastFromFile? connector
(edit) @1048 [1048] 3 weeks apdavison Assorted minor fixes
(edit) @1047 [1047] 3 weeks apdavison Internal renaming for better PEP8 compliance
(edit) @1046 [1046] 4 weeks apdavison A few small fixes.
(edit) @1045 [1045] 6 weeks pierre Add the FastSmallWorldConnector? for Brian, and update NEST docstring to …
(edit) @1044 [1044] 6 weeks pierre Update the tests in order to take into account Nemo (and dt can not be …
(edit) @1043 [1043] 6 weeks pierre cleaning the repository
(edit) @1042 [1042] 6 weeks pierre Add a new way of handling the CurrentSource? objects. Now everything is …
(edit) @1041 [1041] 7 weeks pierre Still some uniformisation of the docstrings accross synapses. Everything …
(edit) @1040 [1040] 7 weeks pierre Simplification of the individual cells.py files and unification of the …
(edit) @1039 [1039] 7 weeks apdavison Cleaning up the repository
(edit) @1038 [1038] 7 weeks apdavison Removed Population.cell property (replaced by all_cells, and …
(edit) @1037 [1037] 7 weeks apdavison Renamed Population.meanSpikeCount() to Population.mean_spike_count() …
(edit) @1036 [1036] 7 weeks apdavison Removed Population.randomInit(distr) method. Deprecated since 0.7, and …
(edit) @1035 [1035] 7 weeks pierre Fix a minor bug in the iterators of an Assembly object, such that …
(edit) @1034 [1034] 7 weeks apdavison Fixed some broken unittests in neo_output branch. Recovered …
(edit) @1033 [1033] 7 weeks apdavison In neo_output branch, made some fixes to the nest backend to improve its …
(edit) @1032 [1032] 7 weeks apdavison In neo_output branch, refactoring to move shared code to pyNN.recording, …
(edit) @1031 [1031] 8 weeks apdavison In neo_output branch, we now use AnalogSignalArrays (one per variable) …
(edit) @1030 [1030] 8 weeks apdavison In neo_output branch, fixed some bugs, started updating examples
(edit) @1029 [1029] 8 weeks pierre minors fixes
(edit) @1028 [1028] 2 months pierre Fix some bugs in Nemo in order to be able to run and stop a simulation …
(edit) @1027 [1027] 2 months pierre Fix some bugs in Nemo in order to be able to run and stop a simulation …
(edit) @1026 [1026] 2 months apdavison In neo_output branch, fixed a bug when recording gsyn, re-added scaling …
(edit) @1025 [1025] 2 months apdavison More work on neo_output branch. neuron and nest backends now both …
(edit) @1024 [1024] 2 months pierre Fix for ticket 199, to be compatible with the documentation
(edit) @1023 [1023] 2 months pierre Wrong commit, sorry, forgot the file fixed the padding issue in Nemo.
(edit) @1022 [1022] 2 months pierre Work with Dan and Andreas to fix last bugs in Brian and Nemo. For those …
(edit) @1021 [1021] 2 months pierre Fix the bug for setting the weights of a population
(edit) @1020 [1020] 2 months pierre Nemo, neuron, nest, brian are now giving similar results for VABenchmark, …
(edit) @1019 [1019] 2 months pierre Fix some minors bugs in the Brian backend. Note that there is a difference …
(edit) @1018 [1018] 2 months pierre Fix bugs in the NeMo? backend, results for VA benchmark are close to …
(edit) @1017 [1017] 2 months pierre The IF_curr_exp benchmark is almost passed for Nemo when dt=1ms, even if …
(edit) @1016 [1016] 2 months apdavison Added version of simpleRandomNetwork that uses CSA
(edit) @1015 [1015] 2 months apdavison Implemented (together with Jochen and Mikael) NEST-specific version of the …
(edit) @1014 [1014] 2 months pierre stupid bug in Nemo
(edit) @1013 [1013] 2 months pierre Start working with the new pyNN version since the common module is …
(edit) @1012 [1012] 2 months apdavison Added scaffolding for pyNN.music module
(edit) @1011 [1011] 2 months emuller Cut a branch: music, the area for implementation of music support for PyNN
(edit) @1010 [1010] 2 months apdavison Starting to work again on nineml module
(edit) @1009 [1009] 2 months apdavison Fixes to CSAConnector in 0.7 branch
(edit) @1008 [1008] 3 months apdavison In neo_output branch, fixed most of the failing unit tests, removed …
(edit) @1007 [1007] 3 months emuller Fix of problem in neuron _convergent_connect
(edit) @1006 [1006] 3 months apdavison New recording system based on Neo now integrated into pyNN.neuron for a …
(edit) @1005 [1005] 3 months apdavison Created branch to work on integrating Neo …
(edit) @1004 [1004] 3 months apdavison Fixed a couple of bugs in nest/connectors.py
(edit) @1003 [1003] 3 months apdavison Removed _simulator attribute from Connector classes. The simulator …
(edit) @1002 [1002] 3 months apdavison Updated setup.py to take account of common now being a package, not a …
(edit) @1001 [1001] 3 months apdavison Trying to fix import error seen when running tests in Jenkins/Hudson? but …
(edit) @1000 [1000] 3 months apdavison No longer store a global reference to the current simulator module in …
(edit) @999 [999] 4 months apdavison Made common into a module, and split into common.populations, …
(edit) @998 [998] 4 months apdavison Removed ConnectionManager. Now that connect() returns a Projection, …
(edit) @997 [997] 4 months apdavison AbstractRNG is now a new-style class (ticket:194)
(edit) @996 [996] 4 months apdavison Tagged release 0.7.2
(edit) @995 [995] 4 months apdavison Forgot to change version number
(edit) @994 [994] 4 months apdavison Ported r993 to 0.7 branch (ticket:195)
(edit) @993 [993] 4 months apdavison Fixed bug when using connect() with single cell IDs (ticket:195)
(edit) @992 [992] 4 months apdavison Created 0.7 branch for backporting bugfixes
(edit) @991 [991] 4 months apdavison Allow modifying parameters of CurrentSource objects after creation in …
(edit) @990 [990] 5 months apdavison Started working on STDP network example
(edit) @989 [989] 5 months apdavison more on converting docs to Sphinx
(edit) @988 [988] 6 months apdavison Started Sphinxifying docs
(edit) @987 [987] 6 months emuller Fixes to NEST NineML code to update to latest python lib9ml API
(edit) @986 [986] 6 months mhull Nineml-NMODL package update
(edit) @985 [985] 7 months mhull [Fixed typo in previous commit]
(edit) @984 [984] 7 months mhull Adjust nrnivmodl call for NMODL building, so that we can globally decided …
(edit) @983 [983] 7 months mhull Changes to pyNN-NEST to bring back-substituion into line with nineml
(edit) @982 [982] 7 months mhull Bring PyNN back-substitution into line with python nineml
(edit) @981 [981] 8 months mhull Changes to NineML files to bring into line with commit r349 to NineML …
(edit) @980 [980] 8 months pierre Minor bug with non uniform nor clipped distribution when launched with …
(edit) @979 [979] 8 months pierre Minor bug when too small populations are launched in a parallel context
(edit) @978 [978] 8 months pierre Optimization in Brian. If only a sub population is recorded, then we do …
(edit) @977 [977] 8 months pierre Fix a bug when assemblies are launched in parallel and some population are …
(edit) @976 [976] 8 months mhull Chnages to nineml code, since 'bindings' have been renamed "alias'
(edit) @975 [975] 8 months emuller (oops forgot) -> re-enabling full build for NEST 9ML backend
(edit) @974 [974] 8 months emuller NEST 9ML prototype backend is working. Most pressing issues are: NEST …
(edit) @973 [973] 8 months emuller Starting work on NineML support for NEST. Not working yet.
(edit) @972 [972] 8 months mhull Changes to pyNN.neuron so that when building from nineml, we add bindings …
(edit) @971 [971] 8 months emuller Integrating Mike Hull's code for joining based on a Model built of …
(edit) @970 [970] 8 months pierre Caching also the data in NEST when recorded from memory and not to file, …
(edit) @969 [969] 8 months apdavison Small fix in SynapseDynamics.describe()
(edit) @968 [968] 8 months apdavison NineMLCellType subclasses now have sorted synapse_types
(edit) @967 [967] 8 months apdavison Forgot that not only 9ML-generated synaptic mechanisms have `NetCon?.wcnt() …
(edit) @966 [966] 8 months emuller Moved python lib9ml nineml examples to be importable -> Adjusted PyNN …
(edit) @965 [965] 9 months apdavison neuron.nineml now ensures that common.simulator is set correctly
(edit) @964 [964] 9 months emuller Factoring out 9ML CG generic code from neuron backend in preparation for …
(edit) @963 [963] 9 months apdavison Backed-out unintended change to src/neuron/nineml.py made in r957
(edit) @962 [962] 9 months pierre Some patch in the Brian module when using Short term plasticity. Fix also …
(edit) @961 [961] 9 months pierre Fix for the to_file=False option in NEST. I had a fix also for this, since …
(edit) @960 [960] 9 months apdavison Bumped version number
(edit) @959 [959] 9 months apdavison Tagged 0.7.1 release
(edit) @958 [958] 9 months apdavison renamed COPYING to LICENSE
(edit) @957 [957] 9 months apdavison Added copyright statements
(edit) @956 [956] 9 months pierre Fix due to a syntax error with nest.SetStatus?
(edit) @955 [955] 10 months apdavison Cell types specified in 9ML can now have multiple synaptic channels …
(edit) @954 [954] 10 months pierre Some confusions again in the commit. Re Sorry. Is there a way to delete …
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