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Diff Rev Chgset Date Author Log Message
(edit) @494 [494] 4 months LaurentPerrinet minor changes on the INSTALL instruction / updated URL
(edit) @492 [492] 9 months emuller threshold_detection now returns empty numpy array instead of list for no …
(edit) @491 [491] 9 months emuller Added AnalogSignal?.cov
(edit) @490 [490] 9 months emuller Added AnalogSignal?.slice_exclude_events to cut out (remove) spikes
(edit) @489 [489] 10 months pierre Add an average option for PSTH, if the user wants to have errorbar or not …
(edit) @488 [488] 10 months mpereira corrected bug with units of analysis.make_kernel
(edit) @487 [487] 10 months mpereira added new method SpikeList.averaged_instantaneous_rate
(edit) @486 [486] 10 months mpereira major improvements of SpikeTrain.instantaneous_rate()
(edit) @485 [485] 12 months pierre Add a binary flag to the spike_histogram function, and minor changes.
(edit) @484 [484] 14 months pierre Fix some bugs in id_offset for negative offsets, and for the …
(edit) @483 [483] 15 months mpereira remove draft of function that should have never made it to commit
(edit) @482 [482] 15 months mpereira analysis.crosscorrelate now handles empty correlograms more gracefuly
(edit) @481 [481] 15 months mpereira started edit of new pairwise_crosscorrelate
(edit) @480 [480] 16 months apdavison Fixed bug reported by Duane Nykamp on 13/01/2011 (problem importing …
(edit) @479 [479] 16 months mschmucker last commit contained an error which potentially causes an ImportError? to …
(edit) @478 [478] 16 months mschmucker worked around change in signature of numpy.historgam, trying to maintain …
(edit) @477 [477] 16 months mschmucker adapt to id_list now being a property (and not a function anymore).
(edit) @476 [476] 16 months pierre Error in io.py if a label was also saved in the header, and change the …
(edit) @475 [475] 19 months emuller Get rid of annoying 'scipy missing' message when using …
(edit) @472 [472] 19 months emuller stgen._gen_g_add ... got working again ... an alternative to …
(edit) @470 [470] 20 months pierre Should not only be in the plot function .…
(edit) @469 [469] 20 months pierre harmonization between the plots of cv_isi_hist and isi_hist and the normed …
(edit) @468 [468] 21 months emuller Alternate solution to psyco 32bit limitation & unwanted warnings
(edit) @467 [467] 21 months mpereira conditional check of psyco (now only for 32-bit)
(edit) @466 [466] 21 months mpereira fixed import bug in analysis.crosscorrelate()
(edit) @465 [465] 21 months emuller MERGE branches/parameter_set_schema_validation [449:464] into trunk - …
(edit) @463 [463] 21 months pierre Fix documentation of the gamma_generator function
(edit) @462 [462] 21 months pierre Add a gamma_generator function into stgen, and simplify all the positions …
(edit) @455 [455] 21 months mpereira removed dependency of signals/analogs.py on analysis. added support for …
(edit) @453 [453] 21 months mpereira Added crosscorrelate() to analysis.py
(edit) @452 [452] 21 months bruederle BUG FIX: in function get_data(), reading files with a header but no spikes …
(edit) @451 [451] 21 months mpereira Added make_kernel() to analysis.py
(edit) @448 [448] 21 months emuller Added support for using rpy2 in stgen if present, without breaking support …
(edit) @446 [446] 2 years apdavison SpikeTrain.time_slice() now (again) accepts a sequence of t_start …
(edit) @445 [445] 2 years pierre Minor patch to deal with the new variable saved in pyNN header
(edit) @443 [443] 2 years apdavison datastore key-generators now work properly if the component is the …
(edit) @442 [442] 3 years apdavison Some tweaks to the init_logging() function and other logging-related …
(edit) @441 [441] 3 years apdavison Very minor change: the colour() function (for pretty console output) now …
(edit) @440 [440] 3 years apdavison Dependency warnings now use the warnings module instead of print …
(edit) @439 [439] 3 years apdavison Tiny change in parameters module to give better error message
(edit) @438 [438] 3 years emuller Fixed stgen problem: inh_gamma_generator array=True returned SpikeTrain if …
(edit) @437 [437] 3 years emuller Doc string for inh_gamma_generator, and new test
(edit) @436 [436] 3 years apdavison Modified the mapping of cell id to image position for plotting activity …
(edit) @416 [416] 3 years apdavison Small fix due to a change in more recent versions of matplotlib
(edit) @415 [415] 3 years pierre Finalize the TableIO dependency... Seems that there is also a memory leak …
(edit) @414 [414] 3 years pierre Add one other dependency, and I know it is bad... Especially because I …
(edit) @412 [412] 3 years pierre Fix in the SpikeList Constructor, to avoid an uncomplete construction that …
(edit) @411 [411] 3 years pierre Change in the DistantDependentPairs? to ad a set_bounds function to fix …
(edit) @406 [406] 3 years pierre Add a sort_by() method to allow the sorting of cells in a SpikeList …
(edit) @404 [404] 3 years pierre Fix a minor bug in PSTH and add also this function for the SpikeTrain
(edit) @403 [403] 3 years pierre Add a complete function to fill SpikeTrain according to a targeted id_list
(edit) @402 [402] 3 years pierre tisean fixes
(edit) @401 [401] 3 years pierre Fix a bug in psth, do some improvement on the interval.py file
(edit) @400 [400] 3 years pierre Add dependencies, but mainly optionnal. A particular package, TableIO, …
(edit) @399 [399] 3 years pierre Forgotten documentation
(edit) @398 [398] 3 years pierre Add a DistanceDependentPairs? selector, to allow precise selection of cells …
(edit) @397 [397] 3 years pierre Minor modifications
(edit) @396 [396] 3 years pierre Force all the numpy arrays of the SpikeList, containing only int and dt …
(edit) @395 [395] 3 years pierre Speed up the loading time of the SpikeList signals from files. Tests are …
(edit) @394 [394] 3 years apdavison Added check for Django for datastore module (see #54)
(edit) @393 [393] 3 years LaurentPerrinet Interval: buggy import
(edit) @390 [390] 3 years pierre Start to add the notion of Interval in the signals package. I'm not happy …
(edit) @389 [389] 3 years pierre Minor bugs fixed regarding raster_plot of SpikeTrain and the new pairs …
(edit) @388 [388] 3 years apdavison Assorted small changes to the signals module.
(edit) @387 [387] 3 years apdavison Added some debugging messages to the io module.
(edit) @386 [386] 3 years apdavison Can now plot images/matrices in visual_logging, as well as use the …
(edit) @385 [385] 3 years apdavison In the datastore module, switching to using the entire …
(edit) @384 [384] 3 years apdavison Some minor changes to the visualization module.
(edit) @383 [383] 3 years apdavison Components to be cached in a datastore no longer require the full_type …
(edit) @382 [382] 3 years JensKremkow changed parameters
(edit) @381 [381] 3 years JensKremkow added parameters to latex export function and example
(edit) @380 [380] 3 years apdavison Fixed a bug in the datastore module when trying to retrieve a …
(edit) @379 [379] 3 years apdavison Moved the test for RPy into the function within which it is used, to avoid …
(edit) @378 [378] 3 years apdavison Added ActivityMap class to visualization module - basically equivalent …
(edit) @377 [377] 3 years apdavison Created a MultipanelMovie class in the visualization module, allowing …
(edit) @376 [376] 3 years pierre Some files were missing…
(edit) @375 [375] 3 years pierre Change the structure of the signals.py file. A signal directory has been …
(edit) @374 [374] 3 years pierre Add a temporary solution for all the functions using pairs of cells (like …
(edit) @373 [373] 3 years mschmucker Added version and capability check for IPython in parameter_search.
(edit) @372 [372] 3 years pierre After a decision made with Luc, the bar is not suitable for the raster …
(edit) @371 [371] 3 years lestebanez change the default marker of the raster plot from circle to vertical line …
(edit) @370 [370] 3 years apdavison Test for inconsistent arguments in AnalogSignal.__init__() was overly …
(edit) @369 [369] 3 years pierre A minor optimization in the pairs selection
(edit) @368 [368] 3 years apdavison Added visualization directory
(edit) @367 [367] 3 years JensKremkow added a small function in parameters which returns the keys and values of …
(edit) @366 [366] 3 years mschmucker forgot two files in the last commit…
(edit) @365 [365] 3 years mschmucker Added draft implementation for an parameter search/optimization framework. …
(edit) @362 [362] 3 years LaurentPerrinet Small fixes on example/single _neuron and sfn2008 / corrected ylabel in …
(edit) @361 [361] 3 years apdavison Minor fix to srblib.py
(edit) @360 [360] 3 years JensKremkow small changes in make_name
(edit) @359 [359] 4 years apdavison Minor improvements to DjangoORMDataStore
(edit) @358 [358] 4 years apdavison When running without X-windows (e.g. on a cluster), then import pylab …
(edit) @357 [357] 4 years apdavison Minor bug-fix in AnalogSignalList. Note that previous commit message …
(edit) @356 [356] 4 years apdavison Changed the behaviour of the AnalogSignal constructor. Before, t_start …
(edit) @355 [355] 4 years apdavison Can now (again) combine ParameterRanges and ParameterDists inside a …
(edit) @354 [354] 4 years apdavison Minor fix to the datastore module. ParameterSets have an attribute …
(edit) @353 [353] 4 years apdavison Minor improvements to parameters and random modules
(edit) @352 [352] 4 years emuller Bug fixes to shotnoise_fromspikes
(edit) @346 [346] 4 years JensKremkow little bug fix in jitter
(edit) @342 [342] 4 years JensKremkow add SpikeTrain jitter function
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