root

Revision Log Mode:


Legend:

Added
Modified
Copied or renamed
Diff Rev Chgset Date Author Log Message
(edit) @496 [496] 4 days pierre Remove all unnecessary packages to focus only onto the core of NeuroTools
(edit) @495 [495] 4 days pierre Creating a branch to clean NeuroTools and make it compatible with Neo
(edit) @494 [494] 2 weeks LaurentPerrinet minor changes on the INSTALL instruction / updated URL
(edit) @493 [493] 3 weeks testuser Test commit
(edit) @492 [492] 5 months emuller threshold_detection now returns empty numpy array instead of list for no …
(edit) @491 [491] 5 months emuller Added AnalogSignal?.cov
(edit) @490 [490] 5 months emuller Added AnalogSignal?.slice_exclude_events to cut out (remove) spikes
(edit) @489 [489] 6 months pierre Add an average option for PSTH, if the user wants to have errorbar or not …
(edit) @488 [488] 7 months mpereira corrected bug with units of analysis.make_kernel
(edit) @487 [487] 7 months mpereira added new method SpikeList.averaged_instantaneous_rate
(edit) @486 [486] 7 months mpereira major improvements of SpikeTrain.instantaneous_rate()
(edit) @485 [485] 8 months pierre Add a binary flag to the spike_histogram function, and minor changes.
(edit) @484 [484] 11 months pierre Fix some bugs in id_offset for negative offsets, and for the …
(edit) @483 [483] 12 months mpereira remove draft of function that should have never made it to commit
(edit) @482 [482] 12 months mpereira analysis.crosscorrelate now handles empty correlograms more gracefuly
(edit) @481 [481] 12 months mpereira started edit of new pairwise_crosscorrelate
(edit) @480 [480] 12 months apdavison Fixed bug reported by Duane Nykamp on 13/01/2011 (problem importing …
(edit) @479 [479] 13 months mschmucker last commit contained an error which potentially causes an ImportError? to …
(edit) @478 [478] 13 months mschmucker worked around change in signature of numpy.historgam, trying to maintain …
(edit) @477 [477] 13 months mschmucker adapt to id_list now being a property (and not a function anymore).
(edit) @476 [476] 13 months pierre Error in io.py if a label was also saved in the header, and change the …
(edit) @475 [475] 15 months emuller Get rid of annoying 'scipy missing' message when using …
(edit) @474 [474] 15 months emuller Test Eval and Subclass Schema validators from yaml
(edit) @473 [473] 15 months emuller Updated stgen examples
(edit) @472 [472] 15 months emuller stgen._gen_g_add ... got working again ... an alternative to …
(edit) @471 [471] 15 months emuller Added stgen shotnoise example
(edit) @470 [470] 17 months pierre Should not only be in the plot function .…
(edit) @469 [469] 17 months pierre harmonization between the plots of cv_isi_hist and isi_hist and the normed …
(edit) @468 [468] 17 months emuller Alternate solution to psyco 32bit limitation & unwanted warnings
(edit) @467 [467] 17 months mpereira conditional check of psyco (now only for 32-bit)
(edit) @466 [466] 17 months mpereira fixed import bug in analysis.crosscorrelate()
(edit) @465 [465] 17 months emuller MERGE branches/parameter_set_schema_validation [449:464] into trunk - …
(edit) @464 [464] 17 months emuller Fixups to docstrings
(edit) @463 [463] 17 months pierre Fix documentation of the gamma_generator function
(edit) @462 [462] 17 months pierre Add a gamma_generator function into stgen, and simplify all the positions …
(edit) @461 [461] 18 months emuller Added validation example
(edit) @460 [460] 18 months emuller in validators test: acctually, I think this is better
(edit) @459 [459] 18 months emuller in validators test: yaml files should be close, using with stmt
(edit) @458 [458] 18 months emuller Added another test of loading ParameterSchema? & ParameterSet from yaml …
(edit) @457 [457] 18 months emuller Added another test case of using yaml to define the schema
(edit) @456 [456] 18 months emuller ParameterSchema? and basic validation implemented.
(edit) @455 [455] 18 months mpereira removed dependency of signals/analogs.py on analysis. added support for …
(edit) @454 [454] 18 months emuller Don't expect this to run …
(edit) @453 [453] 18 months mpereira Added crosscorrelate() to analysis.py
(edit) @452 [452] 18 months bruederle BUG FIX: in function get_data(), reading files with a header but no spikes …
(edit) @451 [451] 18 months mpereira Added make_kernel() to analysis.py
(edit) @450 [450] 18 months emuller First prototype of architecture for ParameterSet validation against a …
(edit) @449 [449] 18 months emuller Creating branch for exploring ParameterSet validation against a schema
(edit) @448 [448] 18 months emuller Added support for using rpy2 in stgen if present, without breaking support …
(edit) @447 [447] 21 months mueller Debian package build modified to use pysupport. - simplification of …
(edit) @446 [446] 22 months apdavison SpikeTrain.time_slice() now (again) accepts a sequence of t_start …
(edit) @445 [445] 2 years pierre Minor patch to deal with the new variable saved in pyNN header
(edit) @444 [444] 2 years apdavison Created a branch for integrating neo into NeuroTools
(edit) @443 [443] 2 years apdavison datastore key-generators now work properly if the component is the …
(edit) @442 [442] 2 years apdavison Some tweaks to the init_logging() function and other logging-related …
(edit) @441 [441] 2 years apdavison Very minor change: the colour() function (for pretty console output) now …
(edit) @440 [440] 2 years apdavison Dependency warnings now use the warnings module instead of print …
(edit) @439 [439] 2 years apdavison Tiny change in parameters module to give better error message
(edit) @438 [438] 2 years emuller Fixed stgen problem: inh_gamma_generator array=True returned SpikeTrain if …
(edit) @437 [437] 2 years emuller Doc string for inh_gamma_generator, and new test
(edit) @436 [436] 2 years apdavison Modified the mapping of cell id to image position for plotting activity …
(edit) @435 [435] 2 years emuller numpy.histogram is changing ... add new=False to keeps things "old"
(edit) @434 [434] 2 years lestebanez Spikes.py : optimize the use of intervals in the PSTH for multiple spike …
(edit) @433 [433] 2 years lestebanez spikes.py & analog.py : a better detection of numeric argument for …
(edit) @432 [432] 2 years pierre Should be ok, all tests are passed. The Interval implementation is alsmost …
(edit) @431 [431] 2 years pierre Add the interval notion to the AnalogSignal? object, now debugged. Start to …
(edit) @430 [430] 2 years lestebanez analog.py : port the analogSignalList to intervals. One issue : how to …
(edit) @429 [429] 2 years lestebanez AnalogSignal? : port to intervals.
(edit) @428 [428] 2 years pierre Try to optimize the Interval methods. Now, package is almost fully …
(edit) @427 [427] 2 years pierre Now all the tests are passed, more or less, with the Intervals. So …
(edit) @426 [426] 2 years pierre Try to pass all the tests with the interval package
(edit) @425 [425] 2 years lestebanez spikes.py : failure : 10, errors : 5
(edit) @424 [424] 2 years lestebanez spikes.py : down to 6 failures and 25 errors
(edit) @423 [423] 2 years lestebanez spikes.py : now down to 62 ERRORS…
(edit) @422 [422] 2 years lestebanez spikes : debuging : reduce the unit test FAILURE from 6 to 4. Modified the …
(edit) @421 [421] 2 years lestebanez Make the spikes.py file compilable. Debug so that the SpikeTrain works as …
(edit) @420 [420] 2 years lestebanez spikes.py : finished to implement the trick for Interval/t_start-t_stop …
(edit) @419 [419] 2 years lestebanez 1 - implement a mechanism for compatibility between old 't_start', …
(edit) @418 [418] 2 years lestebanez spikes.py : fixes several bugs
(edit) @417 [417] 2 years lestebanez interval.py : fix interval based spike selection
(edit) @416 [416] 2 years apdavison Small fix due to a change in more recent versions of matplotlib
(edit) @415 [415] 3 years pierre Finalize the TableIO dependency... Seems that there is also a memory leak …
(edit) @414 [414] 3 years pierre Add one other dependency, and I know it is bad... Especially because I …
(edit) @413 [413] 3 years pierre Add some implementations performed by Luc.…
(edit) @412 [412] 3 years pierre Fix in the SpikeList Constructor, to avoid an uncomplete construction that …
(edit) @411 [411] 3 years pierre Change in the DistantDependentPairs? to ad a set_bounds function to fix …
(edit) @410 [410] 3 years pierre Fix, interval implementation should be finished even if tests should also …
(edit) @409 [409] 3 years pierre More and more intervals fixes, addition of a nex wrapper to read .nex …
(edit) @408 [408] 3 years pierre Start to change all the NeuroTools object to use a more general concept of …
(edit) @407 [407] 3 years pierre Creating a branch for Interval
(edit) @406 [406] 3 years pierre Add a sort_by() method to allow the sorting of cells in a SpikeList …
(edit) @405 [405] 3 years LaurentPerrinet extraMP : learning experiment MP + whitening
(edit) @404 [404] 3 years pierre Fix a minor bug in PSTH and add also this function for the SpikeTrain
(edit) @403 [403] 3 years pierre Add a complete function to fill SpikeTrain according to a targeted id_list
(edit) @402 [402] 3 years pierre tisean fixes
(edit) @401 [401] 3 years pierre Fix a bug in psth, do some improvement on the interval.py file
(edit) @400 [400] 3 years pierre Add dependencies, but mainly optionnal. A particular package, TableIO, …
(edit) @399 [399] 3 years pierre Forgotten documentation
(edit) @398 [398] 3 years pierre Add a DistanceDependentPairs? selector, to allow precise selection of cells …
(edit) @397 [397] 3 years pierre Minor modifications
Note: See TracRevisionLog for help on using the revision log.